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2011

Gunarathne, T., T. - L. Wu, J. Y. Choi, S. - H. Bae, and J. Qiu, "Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications" Concurrency and Computation: Practice and Experience: John Wiley and Sons, Jun 27 2011. Abstract

Gunarathne, T., Overview of Cloud Technologies and Parallel Programming Frameworks for Scientific Applications, Bloomington, IN, Indiana University, Jan 11 2011.

Download: thilina_oral_qual_v3_small.pptx (1.76 MB)

2010

Gunarathne, T., T. - L. Wu, H. Li, Y. Zhou, B. Zhang, A. Hughes, S. Ekanayake, J. Y. Choi, S. - H. Bae, Y. Ruan, et al., Parallel Applications And Tools For Cloud Computing Environments, 2nd IEEE International Conference on Cloud Computing Technology and Science (CloudCom2010), Indianapolis, Indiana, Nov 30-12 3 2010.

Download: salsa_cloudcom2010_poster.final_.pptx (5.63 MB)

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, "MapReduce in the Clouds for Science" 2nd IEEE International Conference on Cloud Computing Technology and Science (CloudCom2010), Indianapolis, IN, IEEE, Nov 2010. Abstract

Qiu, J., A. Hughes, S. Ekanayake, T. Gunarathne, S. T. -lon Wu, H. Li, J. Y. Choi, S. - H. Bae, and Y. Ruan, Parallel Applications And Tools For Cloud Computing Environments , Indianapolis, IN, Indiana University, Nov 2010.

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, MapReduce in the Clouds for Science, 2nd IEEE International Conference on Cloud Computing Technology and Science (CloudCom2010), Indianapolis, Indiana, Nov 20-12 3 2010.

Download: mapreduceintheclouds_pres_v1_tomail.pptx (1.8 MB)

Ekanayake, J., T. Gunarathne, and J. Qiu, "Cloud Technologies for Bioinformatics Applications" IEEE Transactions on Parallel and Distributed Systems, vol. PP, no. PP, pp. 1-1, Oct 2010. Abstract

Gunarathne, T., T. - L. Wu, J. Y. Choi, S. - H. Bae, and J. Qiu, Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications , Bloomington, IN, Indiana University, Oct 20 2010. Abstract

Ekanayake, J., X. Qiu, T. Gunarathne, S. Beason, and G. C. Fox, "High Performance Parallel Computing with Clouds and Cloud Technologies" Cloud Computing and Software Services: Theory and Techniques: CRC Press (Taylor and Francis), Jul 2010. Abstract

Qiu, J., T. Gunarathne, J. Ekanayake, J. Y. Choi, S. - H. Bae, H. Li, B. Zhang, Y. Ryan, S. Ekanayake, T. - L. Wu, et al., "Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications" the 11th Annual Bioinformatics Open Source Conference , Boston, MA, Jul 2010.

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications, Emerging Computational Methods for the Life Sciences, The ACM International Symposium on High Performance Distributed Computing (HPDC), Chicago, IL, Jun 21 2010.

Download: ecmls_slides_classic_cloud.pptx (3.96 MB)

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, "Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications" The ACM International Symposium on High Performance Distributed Computing, Chicago, IL, ACM, Jun 2010. Abstract

Ekanayake, J., H. Li, B. Zhang, T. Gunarathne, S. - H. Bae, J. Qiu, and G. C. Fox, "Twister: A Runtime for Iterative MapReduce" The ACM International Symposium on High Performance Distributed Computing (HPDC), Chicago, Jun 2010. Abstract

Qiu, J., J. Y. Choi, S. - H. Bae, T. Gunarathne, G. C. Fox, B. Cao, and D. Wild, Browsing Large Scale Cheminformatics Data with Dimension Reduction , May 2010.

Qiu, J., T. Gunarathne, J. Ekanayake, J. Y. Choi, S. - H. Bae, H. Li, B. Zhang, Y. Ryan, S. Ekanayake, T. - L. Wu, et al., Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications , Bloomington, IN, Indiana University, Apr 17 2010.

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications , Bloomington, IN, Indiana University, Mar 21 2010. Abstract

Ekanayake, J., H. Li, B. Zhang, T. Gunarathne, S. - H. Bae, J. Qiu, and G. C. Fox, Twister: A Runtime for Iterative MapReduce , Bloomington, IN, Indiana University, Mar 18 2010. Abstract

Fox, G. C., J. Qiu, S. Beason, S. - H. Bae, J. Y. Choi, J. Ekanayake, S. Ekanayake, T. Gunarathne, B. Zhang, H. Li, et al., SALSA and Cheminformatics, Innovation Center, Indiana University, Bloomington, IN, Feb 12 2010.

Download: disease-gene_analysis.pptx (714.67 KB)

Fox, G. C., J. Qiu, S. Beason, J. Ekanayake, T. Gunarathne, J. Y. Choi, S. - H. Bae, Y. Ruan, H. Li, B. Zhang, et al., SALSA Group’s Collaborations with Microsoft, Feb 05 2010.

Download: multicoreprojectreport_feb5_2010.pptx (1.46 MB)

Qiu, J., S. Beason, J. Ekanayake, T. Gunarathne, J. Y. Choi, S. - H. Bae, Y. Ruan, H. Li, B. Zhang, S. Ekanayake, et al., SALSA Group’s Collaborations with Microsoft, Innovation Center, Indiana University, Bloomington, IN, Feb 02 2010.

Ekanayake, J., T. Gunarathne, J. Qiu, G. C. Fox, S. Beason, J. Y. Choi, Y. Ruan, S. - H. Bae, and H. Li, Applicability of DryadLINQ to Scientific Applications , Bloomington, IN, Indiana University, Jan 30 2010.

Ekanayake, J., T. Gunarathne, and J. Qiu, Cloud Technologies for Bioinformatics Applications , Bloomington, IN, Indiana University, Jan 04 2010. Abstract

2009

Ekanayake, J., T. Gunarathne, A. S. Balkir, G. C. Fox, C. Poulain, N. Araujo, and R. Barga, "DryadLINQ for Scientific Analyses" 5th IEEE International Conference on e-Science, Oxford UK, Dec 9-11 2009. Abstract

Qiu, J., J. Ekanayake, T. Gunarathne, J. Y. Choi, S. - H. Bae, Y. Ruan, S. Ekanayake, S. Wu, S. Beason, G. C. Fox, et al., Data Intensive Computing for Bioinformatics , Bloomington, IN, Indiana University, Dec 29 2009.

Fox, G. C., X. Qiu, S. Beason, J. Y. Choi, J. Ekanayake, T. Gunarathne, M. Rho, H. Tang, N. Devadasan, and G. Liu, "Biomedical Case Studies in Data Intensive Computing" The 1st International Conference on Cloud Computing (CloudCom 2009) , vol. 5931/2009, Beijing Jiaotong University, China, Springer Berlin / Heidelberg, pp. 2-18, Dec 1-4 2009. Abstract

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